we had to apply this commit https://github.com/BigNoid/Aeon-Nox/comm...a6548da191
to avoid that the include got executed several times (and resets the settings by doing this)
can be replicated (at least on my machiine) when starting nox 3.0.0 for the first time (don´t know for sure if this always happens), entering settings, changing color for settings, and returning to home.
you can see that the include onloads got triggered when you see the notification pop-up.
i had a similar problem before, also for home window. seems that the include conditions do not get checked properly there in all cases.
hope that´s clear enough. if not, ask for more info.