[DanCooper]

All the ones using Ember did not , because I need to go in and add it manually

How are you telling Ember that a new show has been added? 

This guy has not understand how to use Ember in combination with Kodi, even not how the scrapers works in Kodi...

If the scraper "local info only" has been used in Kodi then it's needed that a tvshow.nfo and an NFO for each episode exists, otherwise the files will be ignored (no local info, right?!)
If a scraper like TVDB has been used in Kodi and an tvshow.nfo without an "episodeguide" URL has been used while adding the tv show to Kodi, then no new episode can be added without an episode NFO.
If a scraper like TVDB has been used without a tvshow.nfo, than Kodi knows the "Episode Guide URL" from his own scraper and than it's possible to add new episodes with or without episode NFO.