[graysky]

What is the file system you used (ext3 or ext4, etc.)? If it's ext3 you can use partimage or clonezilla. Why not just manually create the partitions on the new box, then place that HDD in your original box and just copy the entire dir structure from a live CD?

EDIT: even easier is to connect all the drives to one box and boot into a gparted-live cd where you can copy/paste the partitions in a graphically GUI.