[brazen1]

Forget all the KODI and batch files for now.  You need to achieve proper basic playback in Windows Explorer before enhancing.  Confirm the basics first.  I assumed you already achieved that from your success reply elsewhere but what you state here is different.

Set desktop to native 2160p 60Hz.  Use 2160p23, 2160p24, 2160p25, 2160p59, 2160p60 display modes in madVR to switch to, no others.  In MPC rates function unchecked.  (hopefully when installing MPC you also downloaded optional 3D file).  Use FSE in madVR.  Enable 3D settings in madVR for each and every profile.  Just as you found them in my .bin.  You can delete the enable/disable.bat reference in madVR.  Either use enable nvidia 3d.reg or use 3D Wizard in NCP.... or both.  I use Frame Packed but maybe your rip was not done correctly?  Using MKVToolNix Header Editor/Video Track/Video stereo mode, is the value set to 1 or 11 for SBS or 2 or 3 for TAB and saved?  After confirming your file is good to go, right click your 3d.mkv file and select 'open with' and use MPC.  Display should pop up confirm 3D mode active, auto switch to SBS or TAB, report 2160p at matched refresh rate (23Hz or 24Hz) and turn on your glasses.  Done deal. 

What happens?