Win Intel HTPCs/NUCs & Kodi-native 3D MVC Playback
Ah ok didn´t get that you already play 3D ISOs. Yes if that works also 3D MVC-MKV will work. Technically there is no difference in video stream.
ISO and MKV are only containers for video and audio stream.

MKV is a little more efficient in files size, and there are more players available that can play MKV instead if ISO directly (for the 2D part)
I think if you don´t need menu and extras, and only play the movies at your HTPC in 3D, MKV would be better. But it you need time to convert it.

But because you always need a player that can decode the 3D MVC stream from MKV, ISO would be more compatible with other software
3D bluray players.
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Messages In This Thread
What about xvYCC / x.v.Color - by ma9ick - 2016-04-15, 14:01
June 30 download link broken? - by CooperCGN - 2016-08-02, 08:18
RE: Intel HTPC/NUC's w/reliable Kodi-native 3D MVC Playback - by Coolio510 - 2016-11-29, 14:49