[puithove]

Yea, I forgot that's one of the issues I'm having. On each reboot the GUI switches to 30hz mode because that's the "Preferred" from EDID. It does successfully switch to 59.94 when playback starts (this is with jerky video in full effect):
http://sprunge.us/hVAe

So far I've just been changing the GUI to 59.94 after each reboot (If I remember). Still need to google a solution at some point.

Yes, playback of that sample seems smooth(ish) with method set to "De-Interlace". It's a 50hz file and gets played with refresh at 60.0 since I don't have a 50 mode.
http://sprunge.us/iKRb

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Please try the latest from here: http://xbmcnightlybuilds.com/category/openelec-generic/

Actually that was one of the things I tried earlier this morning - r18369-g320ea5e - and it didn't help.