[Warner306]

When updating madvr should you uninstall first or just overwrite files? EDIT: I uninstalled and overwrite old files with new files and installed again. Will report back if the problem is still there.
question 2: I have defined that sd contest should use xxx madvr, and 720p yyy etc. but it is all defined in Kodi and not in madvr. Is this okay?

As long as the Kodi gui is enabled, those profile rules will override any set in madVR.