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I guess you installed the bootloader to the USB...
It should be possible to fix... but not with an update, there is another command like grub-install or something. It takes the disk as parameter probably /dev/sda.
What you can also do is to re-run the installation in expert mode and answer no to question "install bootloader to first HD" and then point it to the correct unit /dev/sd?
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or simply once you booted from the usb drive, remove the usb drive (guessing you use the usb drive for installation only)
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I had the same problem! The problem is, that Ubuntu install the grub on the USB drive! A little Bug! Just do the installation again, and after all is booted from the USB stick, remove it, during the installation! Then grub will detect your HD as your first drive!